This is the website I’m talking about (http://www.febiya.com) I will give example of my issue, just search for “bags” it will fetch a lot of results all the bags in my store have “gender” attribute in place. Now tap on the filter it will show only “Women” with 3 products and no “men” gender will be displayed. The filter works fine on category navigation. The issue exists only for search results.
We tried troubleshooting via disabling all plugins as well as by switching to default wordpress theme. The issue exists as it is. Woocommerce team adviced to consult with theme provider and the same kind of issue I identified with your theme demo as well.
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