We took the dev site live today. For some reason the navigation is not displaying even though it is set to the main navigation. I am also getting this error on the theme settings. WARNING: The “PHP Max Input Vars” parameter is set to 1000 which is not enough for our Theme Settings. You need to increase it to 2000 or higher in your PHP configuration. Contact your hosting provider for help on this matter. Otherwise, you will not be able to save Theme Settings.

I am having the hot look into this but could you tell me why the navigation issues is doing this.